Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008573.1 Corchorus capsularis cultivar CVL-1 contig08594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33582

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603--652
20
2.5
20
90
0
73
44
10
16
30
1.80
666--893
22
10.5
21
72
16
121
40
9
15
34
1.80
667--763
45
2.2
44
87
5
133
43
10
16
29
1.81
790--869
23
3.5
23
83
10
101
37
8
15
38
1.78
661--891
128
1.8
127
83
4
304
39
9
16
35
1.80
790--893
46
2.3
44
85
9
131
37
9
14
38
1.79
1056--1103
22
2.2
22
85
3
62
54
4
14
27
1.59
1802--1826
13
1.9
13
100
0
50
48
12
0
40
1.40
1939--1980
19
2.3
18
84
8
57
61
0
4
33
1.17
1944--1980
19
2.0
19
89
5
58
64
0
2
32
1.07
3067--3220
76
2.0
76
96
0
281
24
27
14
33
1.94
9840--9916
29
2.6
29
78
10
84
16
29
18
35
1.93
10070--10147
29
2.7
29
81
2
84
39
15
24
20
1.91
10070--10129
29
2.0
30
87
3
86
36
13
26
23
1.92
18685--18715
14
2.2
14
100
0
62
51
12
0
35
1.40
26641--26699
31
1.9
31
86
6
84
25
13
6
54
1.64
27343--27453
56
2.0
57
91
5
181
31
16
21
30
1.95
27660--27688
2
14.5
2
100
0
58
48
0
0
51
1.00
30550--30587
2
18.5
2
94
5
67
47
2
0
50
1.15

Tables:   1

The End!