Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008574.1 Corchorus capsularis cultivar CVL-1 contig08595, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43349

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1390--1630
126
1.9
126
94
1
430
42
12
14
29
1.83
3997--4029
2
17.0
2
93
6
59
48
0
0
51
1.00
4642--4882
126
1.9
126
93
1
412
43
13
14
29
1.83
13278--13307
1
30.0
1
93
0
51
0
3
0
96
0.21
13270--13308
8
4.4
9
90
9
55
0
10
0
89
0.48
13266--13305
11
3.2
12
89
10
55
0
10
0
90
0.47
29488--29754
120
2.2
120
95
1
473
25
19
29
24
1.99
32276--32314
2
19.0
2
85
15
53
46
5
0
48
1.24
32385--32485
53
1.9
53
97
0
193
26
21
5
45
1.75
39748--39878
41
3.2
41
71
18
128
44
3
6
46
1.43
39712--39878
82
2.0
81
86
10
232
42
3
7
46
1.48

Tables:   1

The End!