Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008576.1 Corchorus capsularis cultivar CVL-1 contig08597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15119

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
613--713
29
3.4
30
79
9
98
16
29
17
35
1.93
642--713
29
2.5
28
86
6
99
16
30
18
34
1.93
1447--1511
31
2.1
31
100
0
130
41
23
15
20
1.89
6731--6768
13
2.6
14
88
12
51
44
5
10
39
1.61
10959--10995
17
2.2
17
100
0
74
48
5
21
24
1.71
12114--12326
87
2.4
87
89
4
340
44
7
14
33
1.72
12341--12377
15
2.7
15
84
16
53
72
0
0
27
0.84
12114--12377
87
3.1
86
82
9
301
48
5
13
32
1.66
13604--13645
21
1.9
22
85
9
59
14
19
23
42
1.87
13499--14093
88
6.7
88
77
6
549
22
17
19
39
1.92
13500--14003
176
2.8
176
87
3
699
23
18
17
40
1.91
13764--13806
21
2.0
21
81
4
50
23
13
23
39
1.90
13960--14001
21
1.9
22
90
9
68
14
19
26
40
1.89
14119--14187
21
3.3
21
66
8
59
23
10
28
37
1.87
13508--14128
264
2.3
268
82
6
638
22
17
19
40
1.91
14783--14826
21
2.1
21
83
8
54
18
31
9
40
1.81
14870--15001
33
4.0
33
92
1
203
15
42
28
14
1.85

Tables:   1

The End!