Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008577.1 Corchorus capsularis cultivar CVL-1 contig08598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53256

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--185
65
2.8
65
85
3
219
12
35
37
14
1.84
1--187
32
5.8
32
77
7
171
12
35
36
14
1.84
439--472
15
2.3
15
89
0
50
29
0
11
58
1.33
7871--7985
61
2.0
59
89
8
182
33
6
5
53
1.50
8254--8279
1
26.0
1
100
0
52
0
0
0
100
0.00
12927--12952
12
2.2
12
100
0
52
7
23
0
69
1.14
28439--28495
28
2.0
28
100
0
114
31
10
7
50
1.63
29809--29852
21
2.1
21
83
8
54
18
31
9
40
1.81
30060--30195
32
4.2
32
81
2
148
11
42
30
15
1.83
30261--30347
33
2.6
33
80
3
86
13
26
41
18
1.88
30567--30669
31
3.4
31
71
10
95
35
15
20
28
1.93
30569--30727
60
2.7
60
89
0
228
35
16
20
27
1.94
30763--30895
31
4.4
31
71
11
103
25
17
16
40
1.90
30794--30931
60
2.3
60
86
2
179
29
16
14
39
1.88
30816--30950
60
2.2
60
80
0
162
29
18
17
34
1.94
41105--41183
41
1.9
42
97
2
151
40
5
6
48
1.51
41511--41548
11
3.5
11
89
10
51
39
0
2
57
1.12
46996--47040
21
2.1
22
80
12
58
2
6
17
73
1.15
46994--47045
26
2.0
26
85
7
70
3
7
17
71
1.25

Tables:   1

The End!