Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008578.1 Corchorus capsularis cultivar CVL-1 contig08599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78187

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--302
3
10.7
3
100
0
64
0
31
0
68
0.90
9336--9542
103
2.0
103
100
0
414
25
20
5
48
1.72
10871--10897
6
4.5
6
100
0
54
0
14
0
85
0.61
11840--11868
15
1.9
15
100
0
58
65
0
27
6
1.18
12529--12553
1
25.0
1
100
0
50
100
0
0
0
0.00
16353--16395
20
2.2
20
91
0
68
65
11
16
6
1.46
20513--20542
11
2.7
11
94
0
51
36
6
10
46
1.64
21954--23111
331
3.5
331
78
9
1196
32
13
17
36
1.89
23183--23217
2
17.5
2
100
0
70
51
0
0
48
1.00
23387--23419
3
11.0
3
100
0
66
66
0
0
33
0.92
33374--33408
18
1.9
18
88
0
52
51
28
2
17
1.59
36662--36699
14
2.6
14
87
4
58
84
5
7
2
0.86
42111--42154
21
2.1
21
83
8
54
18
27
9
45
1.79
42202--42300
33
3.1
33
91
4
150
16
43
29
11
1.82
42217--42317
32
3.1
32
90
7
143
15
44
27
11
1.82
51647--51706
14
4.7
13
78
16
54
46
25
3
25
1.68
51663--51743
4
21.5
4
69
16
57
45
24
4
24
1.73
51628--51713
18
4.7
18
72
2
73
46
25
4
23
1.71
51674--51743
14
4.9
14
81
6
86
45
25
5
22
1.74
51684--51743
22
2.7
22
81
0
75
45
26
6
21
1.77
51687--51745
30
2.0
30
90
6
93
42
25
8
23
1.82
59769--59809
16
2.6
16
92
0
73
29
12
21
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68467--68496
8
3.6
8
91
8
51
90
0
0
10
0.47
68467--68497
9
3.6
9
95
4
55
90
0
0
9
0.46
69738--69769
16
2.0
16
93
0
55
56
21
12
9
1.64
70217--70475
110
2.4
109
92
2
430
49
2
10
37
1.50
70217--70514
110
2.7
112
83
10
373
49
2
10
37
1.50
75507--75594
44
1.9
45
82
11
108
63
7
15
12
1.50
76741--77015
109
2.5
109
93
4
455
38
11
1
48
1.50

Tables:   1

The End!