Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008579.1 Corchorus capsularis cultivar CVL-1 contig08600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7765

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1824--1884
30
2.0
30
81
6
70
13
21
21
44
1.86
5512--5597
45
1.9
45
83
4
111
38
16
11
33
1.85
5466--5940
22
21.7
22
68
13
151
37
14
9
38
1.79
5688--5772
23
3.8
22
78
6
82
38
12
5
42
1.68
5931--5997
19
3.5
19
85
2
80
26
17
10
44
1.81
6103--6294
22
8.6
22
73
9
131
35
12
9
42
1.75
6103--6288
66
2.8
66
78
9
191
34
12
9
43
1.74
6237--6275
21
2.0
19
85
14
53
41
7
5
46
1.55
6166--6330
66
2.5
66
79
12
146
35
11
9
44
1.72
6353--6450
22
4.5
22
71
13
78
35
16
9
38
1.80
6550--6669
59
2.0
59
96
0
222
40
17
10
32
1.83

Tables:   1

The End!