Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008580.1 Corchorus capsularis cultivar CVL-1 contig08601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13275

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2465--2544
32
2.5
32
97
0
151
11
43
35
10
1.74
2472--2676
33
6.3
33
82
7
156
12
35
35
16
1.87
2853--2877
11
2.3
11
100
0
50
76
8
8
8
1.18
3545--3588
2
23.0
2
81
9
56
47
4
0
47
1.22
3545--3589
15
3.0
15
90
6
65
48
4
0
46
1.22
3545--3588
19
2.3
19
88
0
70
47
4
0
47
1.22
3688--3729
16
2.6
17
81
11
52
9
7
19
64
1.46
4937--5004
15
4.5
15
74
7
66
38
2
1
57
1.23
4925--5005
30
2.7
30
78
17
105
39
2
1
56
1.20
4916--5023
45
2.3
46
81
13
132
43
1
0
53
1.17
4922--5020
13
7.1
13
71
21
67
42
2
1
54
1.18
4993--5035
21
2.1
20
83
12
52
44
4
0
51
1.22
5074--5136
31
2.0
31
90
6
101
31
15
3
49
1.61
5446--5483
19
2.0
20
85
15
53
28
5
2
63
1.30
5655--5762
22
4.9
22
77
8
76
34
10
17
37
1.84
5770--5816
22
2.1
22
84
0
58
27
6
21
44
1.76
5852--5910
22
2.7
22
79
10
66
37
10
16
35
1.83
5916--5981
22
3.0
22
80
6
73
36
6
19
37
1.77
6049--6221
22
7.8
22
70
11
79
43
9
12
34
1.76
6047--6178
22
5.9
22
75
9
108
40
9
12
36
1.77
6074--6265
22
8.7
23
70
15
113
44
9
11
33
1.73
6347--6656
22
14.6
20
70
15
141
41
9
15
33
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6347--6838
44
11.3
44
68
15
188
38
10
15
34
1.83
6349--6656
128
2.4
129
78
5
315
41
9
15
33
1.80
6552--6926
22
16.8
22
68
12
138
37
10
15
36
1.83
6553--6656
46
2.3
44
85
6
129
39
9
14
36
1.79
7109--7159
21
2.4
22
93
3
86
27
41
27
3
1.73
12136--12175
21
1.9
21
100
0
80
35
10
15
40
1.80

Tables:   1

The End!