Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008582.1 Corchorus capsularis cultivar CVL-1 contig08603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5372
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:472 original size:20 final size:21

Alignment explanation


    Indices: 440--493  Score: 60
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        430 ATAAACTTAC

                                   
        440 AAGGTTAAC-AAAAAG-TTTAAT
          1 AAGGTT-ACTAAAAAGCTTT-AT

                         *       
        461 AA-GTTACTAAAATGCTTTAT
          1 AAGGTTACTAAAAAGCTTTAT

                         
        481 AAGGTTACTAAAA
          1 AAGGTTACTAAAA

        494 CTATAAAATC


Statistics
Matches: 29,  Mismatches: 1, Indels: 6
        0.81            0.03        0.17

Matches are distributed among these distances:
  19    2  0.07
  20   12  0.41
  21   15  0.52

ACGTcount: A:0.48, C:0.07, G:0.13, T:0.31


Consensus pattern (21 bp):   
AAGGTTACTAAAAAGCTTTAT

Found at i:1373 original size:19 final size:19

Alignment explanation


    Indices: 1349--1386  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1339 CCATCTAATG

                               
       1349 ATTAGTTTATTCAATTCAA
          1 ATTAGTTTATTCAATTCAA

                               
       1368 ATTAGTTTATTCAATTCAA
          1 ATTAGTTTATTCAATTCAA

       1387 CATAATAAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47


Consensus pattern (19 bp):   
ATTAGTTTATTCAATTCAA
Done.