Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008587.1 Corchorus capsularis cultivar CVL-1 contig08608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29467

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1767--1842
29
2.6
30
87
4
109
40
3
19
35
1.70
2476--2526
10
5.0
10
75
13
50
13
0
72
13
1.12
2475--2525
16
3.2
16
76
15
52
13
0
74
11
1.07
3786--3839
28
1.9
28
84
0
72
44
11
11
33
1.75
4497--4527
11
2.8
11
95
0
53
38
0
0
61
0.96
7235--7306
2
36.5
2
74
13
60
45
4
0
50
1.21
7859--7948
45
2.0
45
95
0
162
25
23
18
32
1.97
10563--10624
30
2.1
30
90
0
97
38
14
12
33
1.84
11114--11141
2
14.0
2
100
0
56
50
0
0
50
1.00
16324--16466
76
1.9
76
81
5
173
16
27
28
27
1.97
16856--16966
35
3.1
35
75
6
114
22
9
21
46
1.79
17019--17062
23
1.9
23
90
0
70
15
11
27
45
1.81
21992--22029
18
2.1
19
90
5
60
44
5
0
50
1.24
24991--25024
16
2.2
16
89
5
52
29
2
8
58
1.43
28274--28312
6
6.5
6
100
0
78
53
15
0
30
1.42
28309--28353
13
3.5
13
90
3
74
55
8
13
22
1.65
28309--28361
25
2.1
25
89
6
81
58
9
11
20
1.60

Tables:   1

The End!