Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008588.1 Corchorus capsularis cultivar CVL-1 contig08609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21586

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1484--1519
19
1.9
18
88
5
54
33
22
2
41
1.68
2001--2038
18
2.1
18
100
0
76
5
18
21
55
1.62
2545--2580
2
18.0
2
100
0
72
50
0
0
50
1.00
13051--13097
21
2.2
21
84
0
58
12
29
6
51
1.65
18031--18869
35
23.7
36
81
9
885
39
9
18
33
1.83
18031--18869
70
11.8
70
88
4
1019
39
9
18
33
1.83
18224--18282
8
7.0
8
74
11
55
42
6
13
37
1.71
18020--18869
178
4.8
178
92
2
1331
39
9
18
32
1.83
21413--21459
23
2.0
23
83
4
58
12
42
31
12
1.81
21513--21557
23
2.0
23
86
4
65
15
40
33
11
1.83

Tables:   1

The End!