Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008592.1 Corchorus capsularis cultivar CVL-1 contig08613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18737

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616--646
6
5.2
6
92
0
53
45
35
3
16
1.63
645--835
38
5.0
38
98
0
364
22
36
18
21
1.95
2912--2949
20
1.9
20
88
0
58
39
18
10
31
1.85
2913--3275
180
2.0
180
100
0
726
39
14
12
33
1.84
3816--3911
11
8.2
12
73
22
64
2
18
0
79
0.84
3817--3916
20
5.2
19
75
15
91
2
19
0
79
0.84
3814--3916
23
4.6
23
73
12
90
1
18
0
79
0.82
3814--3914
25
4.3
23
76
15
82
1
17
0
80
0.81
3815--3914
46
2.1
47
84
14
127
2
18
0
80
0.82
3832--3914
12
7.0
11
80
11
85
2
16
0
80
0.81
3967--4208
47
5.0
47
92
2
367
36
17
23
21
1.95
4384--4818
139
3.1
139
91
1
703
26
18
28
26
1.98
4317--4819
208
2.4
207
80
7
522
26
17
28
26
1.98
4341--4819
69
6.9
70
79
6
494
26
17
28
26
1.98
4961--5019
32
1.9
30
83
13
75
11
18
13
55
1.68
5062--5122
29
2.1
29
96
0
113
27
11
19
40
1.86
5370--5476
50
2.1
50
84
3
135
34
14
15
34
1.89
6990--7053
18
3.3
19
75
20
62
3
25
0
71
1.00
6979--7041
22
2.9
22
80
4
65
4
26
3
65
1.28
12631--12677
21
2.2
22
88
3
69
2
19
2
76
0.99

Tables:   1

The End!