Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008593.1 Corchorus capsularis cultivar CVL-1 contig08614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35947

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5533--5566
13
2.6
13
95
0
59
23
8
8
58
1.56
5563--5589
6
4.5
6
100
0
54
29
0
14
55
1.40
8816--8873
23
2.5
23
83
5
73
8
25
1
63
1.32
17487--17536
3
15.7
3
84
15
57
38
0
0
62
0.96
17494--17557
27
2.4
27
84
7
78
39
1
3
56
1.25
18974--19139
84
2.0
84
92
0
278
31
24
18
26
1.97
34994--35060
32
2.1
32
86
10
93
49
17
8
23
1.75
35372--35475
17
6.6
15
72
16
77
46
0
4
49
1.23
35388--35475
2
47.0
2
72
17
64
47
0
3
48
1.18
35372--35475
30
3.4
30
73
8
86
46
0
4
49
1.23
35877--35917
2
21.5
2
90
9
68
51
0
0
48
1.00

Tables:   1

The End!