Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008594.1 Corchorus capsularis cultivar CVL-1 contig08615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3901
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:2145 original size:21 final size:22

Alignment explanation


    Indices: 2117--2167  Score: 61
    Period size: 21  Copynumber: 2.4  Consensus size: 22

       2107 ATTCTAAATT

                                  
       2117 AAAATAAACTAA-AAACAATGC
          1 AAAATAAACTAACAAACAATGC

               *         *       *
       2138 AAATTAAA-TAACTAACAATGT
          1 AAAATAAACTAACAAACAATGC

                     
       2159 AAAATAAAC
          1 AAAATAAAC

       2168 CTCCAACATA


Statistics
Matches: 24,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  20    3  0.12
  21   21  0.88

ACGTcount: A:0.65, C:0.12, G:0.04, T:0.20


Consensus pattern (22 bp):   
AAAATAAACTAACAAACAATGC
Done.