Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008597.1 Corchorus capsularis cultivar CVL-1 contig08618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15495

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53--445
22
17.6
21
68
14
107
37
15
11
35
1.83
170--210
21
2.0
20
85
4
55
43
17
4
34
1.70
882--977
31
3.1
31
96
1
176
48
3
17
30
1.62
994--1048
27
2.0
27
100
0
110
32
7
10
49
1.65
5028--5375
109
3.2
109
97
1
637
48
1
10
39
1.47
5552--5635
42
2.0
42
97
0
159
27
19
26
27
1.99
5659--5729
34
2.1
34
91
0
115
35
19
22
22
1.96
5659--5739
34
2.4
34
87
0
99
35
20
20
22
1.96
5754--5807
26
2.1
26
85
0
72
22
3
31
42
1.71
6074--6118
22
2.0
22
100
0
90
35
13
11
40
1.80
7303--7334
2
16.0
2
100
0
64
50
0
0
50
1.00
9678--9720
21
2.0
21
100
0
86
34
27
13
23
1.93
10478--10567
3
30.0
3
93
0
108
33
40
0
26
1.57
12593--12665
32
2.3
32
95
0
128
13
36
31
17
1.89
13130--13155
11
2.4
11
100
0
52
0
7
0
92
0.39
13844--13876
2
16.5
2
100
0
66
48
0
0
51
1.00
14220--14268
15
3.3
15
88
5
64
36
2
8
53
1.43
14263--14333
11
5.7
11
73
23
61
54
11
0
33
1.36
14263--14344
26
3.2
26
94
0
146
54
12
0
32
1.37
14272--14344
15
5.4
15
72
24
72
54
13
0
31
1.39
14341--14380
18
2.2
18
86
0
53
55
7
2
35
1.42
15028--15070
19
2.3
19
79
0
50
16
6
4
72
1.24

Tables:   1

The End!