genome.fa.s8600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008600.1 Corchorus capsularis cultivar CVL-1 contig08621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63384

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9084--9122	13	2.9	14	80	7	53	12	7	25	53	1.65
9100--9144	18	2.6	18	80	16	58	11	6	26	55	1.59
12543--12620	29	2.6	28	84	8	75	35	17	21	24	1.95
12784--12853	30	2.3	31	80	7	81	32	27	14	25	1.94
14869--14907	17	2.2	19	86	9	55	58	0	30	10	1.31
15087--15124	11	3.5	11	89	10	51	39	0	2	57	1.12
16493--16575	31	2.7	31	83	1	87	37	15	10	36	1.83
16506--16575	31	2.3	31	87	0	104	35	15	11	37	1.84
18780--18838	25	2.5	24	86	5	75	37	20	0	42	1.52
18848--18915	26	2.6	26	90	0	109	54	10	1	33	1.43
18848--18951	52	2.0	51	81	9	122	53	9	1	34	1.45
19144--19189	21	2.1	22	88	4	67	39	8	39	13	1.75
21968--22005	11	3.5	11	89	10	51	39	0	2	57	1.12
22759--22791	17	1.9	17	88	11	50	36	18	24	21	1.95
23708--23792	30	2.8	30	89	0	125	29	18	17	34	1.94
26208--26235	12	2.3	12	100	0	56	42	0	0	57	0.99
26205--26237	12	2.5	13	85	14	50	42	0	0	57	0.98
26290--26318	11	2.5	12	94	5	51	41	0	6	51	1.28
37498--37671	91	1.9	90	91	2	287	51	3	8	37	1.49
41023--41091	34	2.1	34	91	2	113	59	8	5	26	1.50
41330--41401	31	2.3	31	75	13	76	23	4	9	62	1.43
41615--41687	32	2.3	31	79	4	83	39	31	15	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42681--42720	20	2.0	20	90	9	64	30	2	22	45	1.66
42683--42726	20	2.2	20	84	11	56	29	2	20	47	1.62
43994--44065	23	3.1	23	93	0	117	15	16	26	41	1.88
47292--47363	31	2.3	31	78	4	92	26	4	11	58	1.50
52131--52324	64	3.0	64	96	0	352	38	15	17	29	1.90
57567--57609	6	6.8	6	89	10	68	48	16	2	32	1.58
60368--60531	82	2.0	82	96	0	301	46	13	20	20	1.83
63322--63384	21	3.4	19	79	14	69	52	1	0	46	1.10
63339--63378	13	2.8	14	88	11	55	55	2	0	42	1.13

Tables:   1

The End!