Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008603.1 Corchorus capsularis cultivar CVL-1 contig08624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47754

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3387--3414
6
4.7
6
100
0
56
14
0
0
85
0.59
6003--6035
17
2.1
17
88
11
52
15
6
12
66
1.42
10608--10772
84
2.0
85
83
4
210
51
3
8
36
1.48
10727--10758
14
2.1
16
88
11
50
56
0
15
28
1.40
10711--10843
66
2.0
66
94
2
232
52
0
10
36
1.36
11285--11345
31
2.0
31
86
0
86
34
19
22
22
1.97
11382--11587
103
2.1
97
88
7
297
31
23
18
26
1.97
11746--11825
40
2.0
40
90
0
124
22
17
10
50
1.76
13215--14190
488
2.0
488
98
0
1907
33
26
12
27
1.93
14285--14321
16
2.3
16
90
0
56
10
32
35
21
1.88
26278--26302
6
4.2
6
100
0
50
20
0
16
64
1.30
29038--29117
37
2.1
38
93
2
135
27
32
16
23
1.96
29039--29127
38
2.4
37
90
1
133
25
30
17
25
1.98
29387--29865
38
12.9
38
74
8
349
33
17
20
28
1.95
29496--29625
65
2.0
65
98
0
251
30
14
23
30
1.95
30245--30309
26
2.4
27
82
2
78
18
18
24
38
1.93
30632--30662
16
1.9
16
100
0
62
12
12
16
58
1.64
37702--37752
11
5.1
10
75
17
52
35
1
19
43
1.63
37714--37752
18
2.1
18
90
4
60
38
0
20
41
1.53
39032--39065
16
2.2
16
89
5
52
29
2
8
58
1.43
42289--42322
6
5.5
6
93
6
59
55
14
0
29
1.40
42294--42335
19
2.2
19
83
8
50
59
11
0
28
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42319--42353
13
2.7
13
83
16
54
71
5
2
20
1.19

Tables:   1

The End!