Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008604.1 Corchorus capsularis cultivar CVL-1 contig08625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10907

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283--336
25
2.2
25
100
0
108
38
7
0
53
1.29
1302--1466
31
5.5
30
67
17
110
33
20
18
26
1.96
1307--1466
60
2.7
60
92
0
248
35
20
18
26
1.95
1357--1446
29
3.0
30
69
16
87
32
22
20
25
1.98
1496--1663
31
5.6
29
66
16
101
27
19
18
34
1.95
1495--1659
60
2.8
60
89
1
260
26
20
18
35
1.95
3820--3850
16
2.0
16
93
6
55
51
32
6
9
1.60
6797--6864
16
4.2
16
69
12
50
39
4
5
50
1.47
6805--6872
34
2.1
31
89
10
102
38
2
5
52
1.41
7208--7267
27
2.2
27
90
0
93
30
20
10
40
1.85
9640--9683
21
2.1
21
100
0
88
29
18
29
22
1.97

Tables:   1

The End!