Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008609.1 Corchorus capsularis cultivar CVL-1 contig08630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31644

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
842--876
2
17.5
2
93
0
61
48
2
0
48
1.16
5600--5633
2
18.0
2
88
11
54
50
0
0
50
1.00
5848--5889
17
2.5
17
80
7
50
61
11
9
16
1.55
7050--7076
2
13.5
2
100
0
54
48
0
0
51
1.00
9167--9242
34
2.2
34
86
4
100
28
22
17
31
1.96
11694--11988
145
2.0
145
98
0
563
30
22
15
31
1.95
18633--18661
1
29.0
1
100
0
58
0
0
0
100
0.00
19029--19082
23
2.4
23
90
6
85
18
18
25
37
1.94
23840--23876
2
18.5
2
100
0
74
51
0
0
48
1.00
25400--25439
18
2.2
18
86
8
55
62
2
17
17
1.44
31520--31563
21
2.1
21
100
0
88
9
4
13
72
1.24

Tables:   1

The End!