Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008610.1 Corchorus capsularis cultivar CVL-1 contig08631, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45043

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--347
148
2.2
148
98
1
626
27
19
19
33
1.96
945--969
13
1.9
13
100
0
50
40
8
4
48
1.51
8234--8267
2
17.5
2
87
6
52
50
2
0
47
1.16
8239--8272
17
1.9
17
88
5
50
50
5
2
41
1.42
9407--9435
2
14.5
2
100
0
58
48
0
0
51
1.00
10854--10903
24
2.3
20
76
23
64
36
18
6
40
1.75
11066--11095
2
15.0
2
100
0
60
50
0
0
50
1.00
11434--11474
20
2.0
21
85
4
57
36
4
9
48
1.58
11462--11496
13
2.6
14
86
9
54
57
0
2
40
1.14
11462--11499
18
2.2
17
90
4
58
57
0
2
39
1.12
11980--12008
15
1.9
15
100
0
58
41
3
0
55
1.17
16439--16507
27
2.6
27
88
0
93
34
28
20
15
1.94
18073--18131
28
2.1
28
84
6
75
37
8
16
37
1.80
21166--21344
90
2.0
90
92
0
295
29
20
28
21
1.98
25976--26005
16
1.9
15
93
6
51
0
40
0
60
0.97
28364--28391
1
28.0
1
100
0
56
0
0
0
100
0.00
30657--31646
424
2.3
419
81
7
1092
30
13
14
42
1.83
42469--42531
27
2.2
29
88
5
94
49
9
12
28
1.72

Tables:   1

The End!