Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008611.1 Corchorus capsularis cultivar CVL-1 contig08632, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71354

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10519--11083
66
8.5
65
82
6
521
43
16
18
22
1.88
11121--11146
10
2.6
10
100
0
52
23
0
7
69
1.14
12077--12119
20
2.1
20
83
12
52
4
20
0
74
1.00
20040--20099
17
3.5
16
78
17
50
53
6
18
21
1.67
24144--24206
30
2.1
30
91
5
101
30
17
33
19
1.95
25335--25359
10
2.5
10
100
0
50
92
0
0
8
0.40
27534--27594
30
2.1
28
93
6
104
27
18
34
19
1.95
32763--32832
24
2.9
24
78
2
77
57
8
30
4
1.48
35669--35706
18
2.1
19
90
5
60
18
39
13
28
1.88
37157--37192
2
18.5
2
94
5
65
50
0
0
50
1.00
38100--38142
17
2.6
16
85
10
59
20
23
20
34
1.96
38093--38150
17
3.4
16
81
9
53
24
20
18
36
1.95
38858--38882
2
12.5
2
100
0
50
48
0
0
52
1.00
41173--41199
2
13.5
2
100
0
54
51
0
0
48
1.00
43255--43305
23
2.2
24
89
3
77
19
19
5
54
1.64
43761--43825
32
2.0
32
93
0
112
23
27
18
30
1.97
47905--48031
51
2.5
50
78
5
128
26
14
39
18
1.90
52538--52569
2
16.0
2
100
0
64
50
0
0
50
1.00
54978--55017
2
19.5
2
94
5
71
47
0
2
50
1.14
65814--65855
15
2.7
15
80
16
50
11
14
35
38
1.83

Tables:   1

The End!