Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008614.1 Corchorus capsularis cultivar CVL-1 contig08635, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40


Found at i:1024 original size:22 final size:24

Alignment explanation


    Indices: 990--1051  Score: 65
    Period size: 22  Copynumber: 2.6  Consensus size: 24

        980 ATTCACTGCT

                 *  *               
        990 TTTTAATTAATTGTTTTCTT-TAA
          1 TTTTACTTGATTGTTTTCTTATAA

                         *           
       1013 TTTT-CTTGATTGCTTTCTTAGTAA
          1 TTTTACTTGATTGTTTTCTTA-TAA

                     *     
       1037 TTTTACTTGTTTGTT
          1 TTTTACTTGATTGTT

       1052 AGATTTAATT


Statistics
Matches: 31,  Mismatches: 5, Indels: 4
        0.77            0.12        0.10

Matches are distributed among these distances:
  22   12  0.39
  23    4  0.13
  24    7  0.23
  25    8  0.26

ACGTcount: A:0.18, C:0.08, G:0.10, T:0.65


Consensus pattern (24 bp):   
TTTTACTTGATTGTTTTCTTATAA
Done.