genome.fa.s8615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008615.1 Corchorus capsularis cultivar CVL-1 contig08636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51432

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4862--4932	26	2.7	27	84	6	83	19	14	23	42	1.88
5614--5642	14	2.1	14	100	0	58	34	20	6	37	1.80
6792--6833	21	2.0	21	95	0	75	50	0	35	14	1.43
8110--8228	36	3.4	36	74	15	124	28	17	6	47	1.73
8131--8243	32	3.4	32	71	17	104	28	19	5	46	1.71
8265--8752	106	4.6	106	83	5	490	26	19	9	43	1.82
8227--8754	71	7.5	68	84	7	583	26	19	9	44	1.82
8227--8754	139	3.7	140	85	5	690	26	19	9	44	1.82
8242--8760	35	14.8	35	82	6	563	26	19	10	43	1.82
8827--8984	35	4.5	35	89	2	217	27	12	12	48	1.75
8913--8971	16	3.2	20	63	22	56	30	6	10	52	1.61
8907--8964	19	3.2	19	68	22	52	25	8	10	55	1.62
8985--9096	12	9.7	12	91	5	178	7	25	8	58	1.54
8985--9096	23	4.8	24	92	4	178	7	25	8	58	1.54
9359--9464	49	2.2	49	84	0	131	23	17	5	52	1.66
27601--27930	166	2.0	166	100	0	660	36	19	17	26	1.94
29417--29455	10	4.0	10	90	3	53	20	33	10	35	1.86
29511--29568	30	1.9	30	92	0	98	22	25	18	32	1.97
35472--36046	50	11.6	47	78	10	469	39	17	25	17	1.91
35472--36050	100	5.8	97	81	5	556	39	17	25	17	1.91
35472--36046	149	3.9	149	85	3	700	39	17	25	17	1.91
36831--37018	46	3.8	46	81	11	178	42	14	3	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36831--37078	51	4.9	51	85	6	258	41	15	3	39	1.63
36831--37018	97	1.9	99	84	4	256	42	14	3	39	1.62
43269--43295	13	2.1	13	100	0	54	14	18	44	22	1.86
43468--43508	22	1.9	22	85	5	57	26	21	4	46	1.72
45644--45692	21	2.3	21	82	6	55	14	28	16	40	1.87
48497--48564	27	2.5	27	85	4	84	17	17	22	42	1.89
51394--51428	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!