Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008618.1 Corchorus capsularis cultivar CVL-1 contig08639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55953

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
719--757
6
6.5
6
96
0
60
20
35
43
0
1.52
4689--4728
20
2.0
20
100
0
80
35
0
55
10
1.34
7747--7806
25
2.5
24
86
5
86
35
21
0
43
1.53
7747--7807
24
2.5
26
84
12
85
34
22
0
42
1.54
7815--7932
26
4.7
26
73
9
111
54
9
1
34
1.43
15744--15803
30
2.0
30
90
6
95
35
23
25
16
1.95
22579--23053
56
8.6
56
67
15
265
38
7
16
37
1.77
22656--22695
21
1.9
21
89
0
62
47
0
12
40
1.41
22656--22703
21
2.3
21
85
0
60
47
4
10
37
1.57
22840--23119
19
16.1
19
64
17
103
38
6
16
37
1.76
22885--23007
16
7.5
16
67
15
72
41
4
17
36
1.71
22922--23018
29
3.1
29
75
16
104
45
3
14
37
1.61
22922--22962
21
2.0
21
85
9
57
51
0
12
36
1.40
22986--23028
21
2.0
21
95
0
77
46
0
13
39
1.44
22677--23004
35
9.5
35
85
5
382
39
7
17
35
1.79
23007--23121
35
3.3
34
86
3
158
38
6
16
38
1.76
29161--29321
78
2.0
81
86
5
231
32
13
12
42
1.81
29966--29990
13
1.9
13
100
0
50
44
0
0
56
0.99
29425--30109
353
1.9
352
86
4
977
35
9
15
38
1.81
30105--30203
3
34.0
3
77
18
79
58
0
2
39
1.10
30105--30202
5
19.0
5
80
15
87
58
0
2
39
1.10
30112--30203
8
10.9
8
84
15
91
58
0
2
39
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30105--30199
28
3.6
27
85
14
119
57
0
2
40
1.10
30313--30341
14
2.0
15
93
6
51
68
0
6
24
1.13
30552--30598
22
2.1
23
88
4
69
42
23
14
19
1.88
31287--31314
8
3.5
8
100
0
56
67
10
10
10
1.42
31692--31732
17
2.4
17
88
8
57
26
17
19
36
1.94
35020--35098
26
3.0
26
98
0
149
51
7
21
18
1.71
39281--39349
31
2.2
31
94
0
120
33
15
11
39
1.84
40608--40647
11
3.5
11
83
6
53
37
17
0
45
1.49
40950--41011
31
2.0
31
93
0
106
43
4
20
30
1.73
41528--41585
29
2.0
29
89
0
89
22
20
15
41
1.90
43218--43327
58
1.9
58
98
0
211
22
13
6
57
1.59
43397--43440
14
3.1
14
73
0
52
43
9
6
40
1.63
50810--50858
23
2.1
23
85
11
64
57
6
4
32
1.42

Tables:   1

The End!