genome.fa.s8621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008621.1 Corchorus capsularis cultivar CVL-1 contig08642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90731

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072--1096	13	1.9	13	100	0	50	72	4	8	16	1.24
2371--2408	19	2.1	18	90	5	58	34	21	2	42	1.67
9429--9454	11	2.4	11	100	0	52	84	0	7	7	0.77
9596--9625	5	6.0	5	92	0	51	80	3	0	16	0.85
9701--9725	13	1.9	13	100	0	50	72	4	8	16	1.24
11003--11040	19	2.1	18	90	5	58	34	21	2	42	1.67
19509--19635	51	2.5	52	88	7	188	48	13	2	35	1.55
19998--20030	13	2.6	13	90	4	50	3	0	15	81	0.80
22196--22220	13	1.9	13	100	0	50	44	0	40	16	1.47
24375--24446	32	2.3	32	95	2	128	23	26	0	50	1.50
28064--28089	8	3.2	8	100	0	52	50	50	0	0	1.00
35318--35421	52	2.0	52	98	0	199	34	27	11	25	1.91
35600--35689	45	2.0	45	100	0	180	28	22	15	33	1.95
37074--37098	1	25.0	1	100	0	50	100	0	0	0	0.00
41014--41055	20	2.1	20	100	0	84	45	23	4	26	1.73
43283--43308	2	13.0	2	100	0	52	50	0	0	50	1.00
46542--46616	39	1.9	39	100	0	150	52	16	8	24	1.70
46679--46704	13	2.0	13	100	0	52	61	7	7	23	1.49
48101--48165	32	2.0	32	96	0	121	47	15	16	20	1.82
48376--48417	20	2.1	20	86	0	57	35	9	14	40	1.78
49073--49128	26	2.2	26	90	0	85	33	1	8	55	1.42
49085--49143	26	2.3	26	85	5	75	38	3	8	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49122--49159	15	2.5	15	91	0	58	50	7	2	39	1.46
49123--49186	15	4.6	15	77	16	57	54	10	1	32	1.45
49689--50004	159	2.0	159	97	0	596	41	22	13	22	1.88
51702--51809	52	2.1	52	96	0	198	26	24	23	25	2.00
59140--59230	42	2.2	42	82	4	103	8	25	40	25	1.84
64589--64683	42	2.3	41	87	7	129	10	26	38	24	1.87
66462--66496	2	18.0	2	88	5	54	51	0	0	48	1.00
66631--66725	47	2.0	48	95	2	174	31	11	20	36	1.88
82173--82240	15	4.5	15	86	0	100	13	17	22	47	1.82
84409--84447	9	4.3	9	83	0	51	43	2	0	53	1.14
87233--87263	1	31.0	1	100	0	62	0	0	0	100	0.00

Tables:   1

The End!