Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008622.1 Corchorus capsularis cultivar CVL-1 contig08643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43908

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1529--1644
33
3.6
33
81
5
123
40
17
9
32
1.82
1660--1764
33
3.2
33
80
2
122
44
20
9
25
1.81
3227--3259
16
2.0
17
94
5
59
15
0
0
84
0.61
3332--3365
8
4.1
8
85
7
50
23
2
14
58
1.50
4751--4809
31
1.9
31
89
0
91
33
23
27
15
1.95
6445--6479
13
2.7
13
95
0
61
60
8
11
20
1.57
13605--13630
7
3.7
7
100
0
52
15
15
42
26
1.87
13732--13800
32
2.2
31
94
2
120
39
7
20
33
1.80
22870--22944
35
2.1
35
97
0
141
38
28
10
22
1.87
23318--23350
12
2.6
13
85
9
50
0
30
9
60
1.27
25107--25221
30
3.8
30
82
4
142
18
40
21
19
1.91
28020--28052
11
3.0
11
91
8
50
0
36
36
27
1.57
33117--33149
17
1.9
17
100
0
66
30
36
6
27
1.81
33297--33337
21
2.0
21
100
0
82
31
34
14
19
1.92
33489--33650
55
2.9
55
89
0
243
20
28
19
32
1.97

Tables:   1

The End!