Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008632.1 Corchorus capsularis cultivar CVL-1 contig08653, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92969

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
665--824
31
5.2
31
83
3
189
37
12
16
33
1.86
943--1009
31
2.2
31
86
5
93
22
14
11
50
1.76
3026--3072
3
15.7
3
90
0
76
29
70
0
0
0.88
17844--17896
26
2.0
26
96
0
97
37
18
13
30
1.89
20831--20981
74
2.0
77
89
5
236
25
14
20
39
1.90
27981--28109
64
2.0
64
95
0
231
28
15
20
35
1.93
28263--28318
28
1.9
30
85
7
80
44
10
19
25
1.83
29667--29708
21
2.0
21
95
0
75
26
7
33
33
1.83
30266--30353
31
2.8
31
91
1
140
38
30
10
20
1.86
30377--30463
45
1.9
45
95
4
158
33
25
16
25
1.96
32412--32507
36
2.7
36
86
0
129
20
32
20
26
1.98
32766--32817
24
2.2
24
82
0
59
25
26
32
15
1.95
32779--32830
24
2.2
24
96
0
95
15
28
38
17
1.90
34102--34213
28
4.0
29
72
16
110
22
30
31
16
1.95
34105--34240
55
2.5
56
82
9
172
22
31
32
13
1.92
34785--34869
35
2.4
35
79
11
93
29
23
17
29
1.97
34838--34958
36
3.3
36
87
6
156
25
26
27
20
1.99
35085--35117
10
3.4
10
87
4
50
63
0
0
36
0.95
35530--35617
31
2.8
31
94
1
149
38
32
10
18
1.84
41058--41086
15
2.0
15
93
6
51
0
0
10
89
0.48
41185--41267
43
1.9
44
92
2
141
20
18
24
37
1.94
41996--42064
32
2.2
32
84
5
86
8
39
39
13
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45661--45708
18
2.8
17
84
6
60
62
4
10
22
1.44
45662--45708
17
2.7
18
86
3
60
63
4
10
21
1.43
46076--46116
19
2.1
20
90
4
66
19
36
9
34
1.85
46216--46276
22
2.7
24
87
10
92
34
24
0
40
1.55
73335--73415
40
2.0
40
100
0
162
32
12
17
38
1.87
76027--76070
2
22.5
2
86
4
63
52
4
0
43
1.22
76797--76836
14
2.7
14
88
7
53
12
5
35
47
1.63
77728--77754
4
6.8
4
100
0
54
77
0
0
22
0.76
83349--83382
2
18.0
2
88
11
54
50
0
0
50
1.00
88051--88110
24
2.6
22
84
10
75
51
8
3
36
1.49
87930--88148
103
2.1
103
90
0
348
33
13
17
34
1.89
88121--88206
40
2.2
40
100
0
172
11
18
40
29
1.86
88647--89205
149
3.9
143
85
6
682
30
15
20
33
1.93
90447--90777
161
2.0
163
90
1
513
32
12
16
37
1.87
90608--91646
333
3.1
332
86
5
1484
34
12
17
35
1.87

Tables:   1

The End!