genome.fa.s8636.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008636.1 Corchorus capsularis cultivar CVL-1 contig08657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98137

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10749--10807	18	3.4	18	71	21	54	76	0	13	10	1.02
13660--13721	23	2.7	23	87	7	81	79	0	17	3	0.87
13667--13721	6	9.3	6	76	11	60	80	0	18	1	0.81
13647--13721	30	2.6	29	77	10	80	78	0	18	2	0.86
16260--16523	35	7.5	35	84	5	282	18	19	21	40	1.91
16274--16523	70	3.6	70	85	4	335	18	19	21	40	1.91
16246--16523	105	2.6	104	85	3	360	18	20	21	39	1.92
16921--16951	13	2.5	13	94	5	55	48	16	0	35	1.46
16921--16951	6	5.0	6	92	7	53	48	16	0	35	1.46
16948--16981	13	2.6	13	100	0	68	55	8	8	26	1.59
17885--17909	10	2.5	10	100	0	50	24	8	20	48	1.76
18481--18519	20	2.0	20	84	0	51	66	10	7	15	1.43
19035--19099	33	2.0	33	87	0	94	26	7	24	41	1.82
19546--19602	29	2.0	29	89	6	89	31	19	26	22	1.98
19649--19686	18	2.1	19	90	5	60	28	13	39	18	1.88
45533--45566	17	2.0	17	100	0	68	47	17	35	0	1.48
48855--48982	53	2.3	59	82	8	151	17	21	3	56	1.57
48887--49043	26	5.6	28	76	11	144	17	19	5	57	1.58
48887--49042	86	1.9	80	85	7	213	17	19	5	57	1.59
49017--49196	36	4.9	36	81	6	213	21	20	3	55	1.58
49170--49555	22	18.0	21	75	10	313	20	19	5	54	1.63
49143--49582	44	10.3	43	75	11	331	19	19	5	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49071--49263	7	26.7	7	67	14	61	19	19	3	56	1.56
49528--49574	19	2.5	18	83	10	58	14	17	2	65	1.36
49512--49704	35	5.1	40	76	13	124	18	22	2	56	1.51
49552--49710	7	22.9	7	63	15	53	18	23	1	56	1.49
49615--49718	35	3.0	35	92	0	172	19	24	0	55	1.49
49747--49855	22	5.3	20	74	11	87	25	20	1	52	1.56
50879--50924	12	3.8	12	85	5	58	0	50	0	50	1.00
51149--51182	18	1.9	17	88	5	50	0	50	0	50	1.00
53504--53552	23	2.2	22	92	3	80	46	12	12	28	1.77
61690--62016	177	1.8	177	88	2	496	34	12	16	35	1.87
65760--65828	29	2.3	32	75	12	74	31	17	11	39	1.85
69056--69100	22	2.2	20	84	11	56	40	22	17	20	1.92
69018--69122	55	1.9	53	84	3	138	36	25	20	18	1.95
69072--69171	31	3.2	31	85	1	128	35	27	20	18	1.95
70661--70839	75	2.4	75	77	6	202	40	17	15	27	1.89
74773--74997	88	2.6	87	93	3	382	42	7	17	33	1.76
76709--76749	21	2.0	21	95	0	73	46	14	26	12	1.80
76711--76757	21	2.2	21	84	0	58	51	12	27	8	1.69
82389--82451	30	2.0	32	93	6	112	71	0	15	12	1.15
83269--83768	35	14.3	35	94	0	835	30	14	22	33	1.94
86971--87005	11	3.2	11	83	0	52	2	2	14	80	0.95
92052--92103	1	52.0	1	80	0	50	88	0	7	3	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92037--92101	26	2.4	26	84	5	76	83	0	10	6	0.82
92361--92432	31	2.3	31	85	0	99	38	27	11	22	1.88
93727--94444	364	2.0	362	94	0	1274	39	10	23	26	1.87
95895--95973	16	4.9	17	76	4	58	54	31	10	3	1.52
95918--95961	16	2.8	16	89	6	63	59	27	9	4	1.48
96167--96296	32	4.1	32	87	5	174	37	35	9	17	1.82
96495--96545	25	2.0	25	84	3	66	31	13	7	47	1.72
96745--96779	18	1.9	18	88	0	52	57	2	14	25	1.51

Tables:   1

The End!