Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008640.1 Corchorus capsularis cultivar CVL-1 contig08661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2168
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:126 original size:19 final size:18

Alignment explanation


    Indices: 102--137  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

         92 TGAAGATTTC

                               
        102 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
        121 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

        138 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT

Found at i:1638 original size:19 final size:18

Alignment explanation


    Indices: 1614--1651  Score: 58
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       1604 GATCAAGATT

                     *         
       1614 ATTTGAAGATAATTTGAAG
          1 ATTTGAAGACAA-TTGAAG

                              
       1633 ATTTGAAGACAATTGAAG
          1 ATTTGAAGACAATTGAAG

             
       1651 A
          1 A

       1652 ATTCATTCAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    7  0.39
  19   11  0.61

ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32


Consensus pattern (18 bp):   
ATTTGAAGACAATTGAAG
Done.