Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008644.1 Corchorus capsularis cultivar CVL-1 contig08665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78589

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--138
2
18.5
2
100
0
74
48
0
0
51
1.00
13949--14049
50
2.1
48
88
7
150
24
6
20
47
1.75
14906--15009
31
3.4
30
75
10
104
34
19
20
25
1.96
14889--14978
29
3.0
29
72
12
101
30
17
20
32
1.95
14847--15011
60
2.8
60
88
2
235
35
16
18
29
1.94
15113--15215
31
3.4
29
71
15
84
30
15
16
37
1.90
15047--15211
60
2.7
59
87
3
240
29
17
18
35
1.94
15079--15180
29
3.4
29
65
15
82
30
18
18
32
1.95
23819--23878
28
2.1
28
81
0
66
16
8
23
51
1.71
23831--23886
28
2.0
28
92
0
94
16
8
25
50
1.74
35106--35141
19
1.9
18
88
5
54
41
2
22
33
1.68
35739--35774
18
2.1
18
89
5
56
11
19
8
61
1.54
36792--37104
122
2.6
122
91
1
486
31
30
25
11
1.91
37203--37371
25
6.8
25
81
5
153
27
32
34
5
1.81
37187--37940
50
14.7
50
74
9
448
27
31
35
5
1.79
37187--37947
75
9.9
75
74
10
477
27
31
35
4
1.79
37228--37944
25
29.0
24
70
14
222
28
31
35
4
1.77
37424--37947
25
20.8
25
73
11
338
27
32
36
4
1.76
37992--38044
26
2.0
26
81
0
61
30
13
37
18
1.89
38983--39023
17
2.5
17
88
4
57
2
24
0
73
0.96
41122--41204
41
2.0
41
92
0
139
16
31
21
30
1.96
41439--41630
49
3.9
49
97
1
366
29
26
25
18
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41440--41630
99
1.9
99
98
0
373
29
26
25
18
1.98
52949--52973
7
3.6
7
100
0
50
64
12
0
24
1.27
54891--54941
25
2.1
24
89
7
77
35
15
13
35
1.87
57903--57928
12
2.2
12
100
0
52
30
0
15
53
1.42
70227--70276
17
3.1
17
85
11
77
28
12
26
34
1.92
70199--70273
16
4.7
15
82
8
69
28
16
25
30
1.96
75417--75556
71
2.0
68
90
4
217
29
12
7
50
1.67
77052--77131
29
2.7
29
92
3
124
27
23
11
37
1.89
77816--77873
29
2.0
29
100
0
116
41
17
20
20
1.90

Tables:   1

The End!