genome.fa.s8645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008645.1 Corchorus capsularis cultivar CVL-1 contig08666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71330

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3391--3421	2	15.5	2	100	0	62	51	0	0	48	1.00
5160--7746	677	3.8	678	90	1	3904	32	15	14	37	1.88
10094--10458	21	17.5	21	75	7	262	27	11	21	39	1.88
10091--10464	83	4.5	84	74	10	243	28	11	21	38	1.88
10285--10416	40	3.2	40	85	7	151	29	10	19	40	1.85
10123--10475	187	1.9	189	88	3	534	28	11	20	39	1.87
10561--10658	21	4.7	21	80	9	85	29	12	21	36	1.90
10472--10609	66	2.1	67	81	5	156	31	13	23	31	1.93
10562--10658	42	2.3	43	89	3	144	29	12	20	37	1.89
10580--10659	21	3.8	21	83	0	106	30	13	22	33	1.93
12556--14455	677	2.8	668	87	4	2610	32	14	15	38	1.87
15618--15657	18	2.2	19	90	4	64	60	2	12	25	1.45
15991--16044	21	2.6	20	83	13	65	50	7	3	38	1.48
21442--21500	25	2.4	25	91	5	93	18	23	33	23	1.97
23278--23363	31	2.9	28	82	6	91	26	23	15	34	1.94
23324--23386	31	2.1	29	82	11	74	30	30	9	30	1.89
24967--25049	31	2.7	31	80	7	91	40	14	19	25	1.89
25219--25252	18	1.9	18	94	5	61	88	8	2	0	0.62
25219--25275	24	2.4	24	88	5	80	85	5	8	0	0.72
25220--25275	25	2.3	24	87	3	76	87	3	8	0	0.65
26325--26441	59	2.0	59	89	3	182	28	20	16	35	1.94
39816--39874	4	14.8	4	92	0	82	50	20	0	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42083--42185	32	3.3	32	87	5	156	15	9	36	37	1.81
42098--42182	15	5.5	15	71	15	66	18	8	34	38	1.81
42083--42199	32	3.7	30	80	8	117	14	9	36	39	1.79
42345--42458	32	3.6	32	96	0	210	3	12	32	51	1.56
42345--42464	16	7.5	16	80	0	132	4	12	32	50	1.59
42528--42557	15	1.9	16	93	6	53	0	13	40	46	1.43
46612--46713	37	2.8	37	90	0	168	47	12	18	21	1.82
46601--46786	73	2.5	72	80	5	205	48	10	18	22	1.79
46689--47159	77	6.2	74	86	8	295	46	11	19	22	1.81
46761--47159	36	10.5	36	75	15	356	46	12	19	22	1.83
46761--47159	76	5.2	76	95	2	694	46	12	19	22	1.83
47103--47216	57	2.0	57	98	0	219	44	12	20	22	1.84
47193--47320	36	3.5	35	78	13	148	46	12	17	23	1.83
47077--47900	134	6.0	134	90	4	1079	45	10	21	22	1.82
47158--47345	77	2.5	77	96	0	342	47	11	19	22	1.80
47288--47672	58	6.0	59	76	19	353	45	9	22	22	1.81
47347--47461	40	3.0	38	76	13	128	45	11	19	24	1.83
47498--47614	36	3.0	41	76	14	156	46	11	20	21	1.83
47077--47900	269	3.0	270	89	5	1160	45	10	21	22	1.82
47480--47595	41	3.0	37	76	15	128	44	11	20	23	1.83
47632--47916	41	7.4	41	76	13	327	44	11	20	23	1.84
47615--47953	76	4.5	76	95	0	581	44	10	20	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47993--48332	37	9.2	37	92	0	527	37	7	29	24	1.84
48302--48461	74	2.2	75	84	7	211	38	10	24	27	1.87
48340--48547	37	5.7	37	90	0	312	38	10	23	28	1.87
54909--54939	14	2.2	14	94	0	53	19	22	6	51	1.69
63092--63134	19	2.3	19	87	0	59	32	34	6	25	1.83

Tables:   1

The End!