Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008649.1 Corchorus capsularis cultivar CVL-1 contig08670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21381

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
516--546
2
15.5
2
100
0
62
48
0
0
51
1.00
2036--2380
22
15.4
22
80
8
340
18
12
17
51
1.76
2036--2380
44
7.7
44
87
6
383
18
12
17
51
1.76
2083--2380
133
2.2
135
87
4
415
18
13
16
51
1.77
2442--2511
22
3.2
22
93
0
122
21
12
14
51
1.75
2442--2531
22
4.1
22
88
7
121
23
12
13
51
1.74
4654--4707
16
3.4
15
76
19
56
29
38
24
7
1.82
4654--4770
32
3.7
31
82
7
130
33
37
20
8
1.83
4714--4770
16
3.6
16
80
0
69
38
35
17
8
1.81
5593--5734
7
18.1
7
69
22
52
36
36
17
9
1.82
5608--5702
16
6.1
16
80
7
88
32
35
21
10
1.87
5617--5703
32
2.7
32
78
0
102
33
35
19
11
1.88
5697--5731
15
2.2
16
90
5
54
45
42
5
5
1.51
5656--5737
40
2.0
41
88
2
121
40
36
13
9
1.78
8505--8547
22
2.0
21
81
4
50
13
23
6
55
1.62
11304--11711
35
11.7
35
85
7
548
34
17
16
31
1.93
11706--11807
54
1.9
53
95
2
186
26
22
20
30
1.98
11703--11819
54
2.2
53
86
3
180
29
21
19
29
1.98
12846--12886
18
2.3
18
87
4
57
0
17
0
82
0.66
12846--12896
16
3.1
16
86
11
59
0
15
1
82
0.76
12968--13039
37
1.9
38
82
2
92
31
11
12
44
1.77
19806--19849
22
2.0
22
100
0
88
31
4
36
27
1.77

Tables:   1

The End!