Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008654.1 Corchorus capsularis cultivar CVL-1 contig08675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45057

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1150--1175
6
4.3
6
100
0
52
19
0
50
30
1.48
7033--7119
33
2.6
32
77
13
95
16
33
32
18
1.93
7047--7232
33
5.9
32
75
15
156
14
34
33
17
1.90
7067--7252
92
2.0
92
93
0
318
14
32
35
17
1.90
15293--15323
3
10.3
3
100
0
62
67
0
0
32
0.91
28290--28336
21
2.2
22
84
3
60
14
29
14
40
1.87
33369--33440
31
2.3
31
97
0
135
25
20
22
31
1.98
33926--33955
12
2.5
12
100
0
60
53
6
6
33
1.53
34524--34598
33
2.3
33
100
0
150
16
16
42
25
1.87
37958--38192
116
2.0
116
99
0
461
51
15
9
23
1.73
38569--38618
26
2.0
25
88
11
75
68
10
4
18
1.34
40994--41026
18
1.9
17
88
11
50
39
0
36
24
1.56

Tables:   1

The End!