Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008655.1 Corchorus capsularis cultivar CVL-1 contig08676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62930

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
266--308
11
4.0
11
81
6
52
74
2
0
23
0.93
266--308
21
2.0
21
90
0
68
74
2
0
23
0.93
275--308
10
3.3
10
87
4
50
76
2
0
20
0.92
9089--9168
41
2.1
36
84
13
99
38
12
13
35
1.83
9190--9268
27
2.9
27
92
0
131
43
11
6
39
1.66
22384--22411
11
2.5
11
100
0
56
82
0
17
0
0.68
24927--24982
29
2.0
28
96
3
103
35
10
7
46
1.66
39906--39955
25
2.0
25
88
11
75
18
4
10
68
1.34
43716--43752
10
3.7
10
96
0
65
35
21
0
43
1.53
49148--49202
25
2.3
23
87
9
76
27
14
7
50
1.69
49562--49590
6
4.8
6
100
0
58
48
17
0
34
1.47
49932--50484
285
1.9
285
98
0
1079
39
17
13
30
1.88
53414--53488
39
1.9
39
83
5
98
17
21
4
57
1.56
53475--53507
15
2.3
15
89
5
50
21
18
0
60
1.36
53495--53577
22
3.8
22
79
6
89
14
16
10
57
1.64
53495--53680
43
4.4
43
74
14
111
20
19
6
52
1.69
53610--53701
21
4.4
21
88
2
141
23
25
4
46
1.70
53596--53680
41
2.1
41
91
4
136
24
23
4
47
1.71
54050--54103
27
1.9
29
81
7
67
53
22
3
20
1.61
59603--59675
28
2.8
25
85
10
92
41
26
15
17
1.89
59912--60020
45
2.4
45
86
1
148
27
16
25
30
1.97
61473--61693
107
2.1
102
79
5
228
33
15
9
41
1.79

Tables:   1

The End!