Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008657.1 Corchorus capsularis cultivar CVL-1 contig08678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27656

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521--584
32
2.0
32
84
6
85
42
29
15
12
1.84
2043--2076
7
4.9
7
100
0
68
29
14
14
41
1.86
6370--6402
17
1.9
17
93
0
57
36
15
3
45
1.61
6459--6679
111
2.0
110
89
4
338
47
9
9
33
1.69
7888--8126
78
3.2
76
88
7
337
35
12
0
50
1.47
7887--8120
70
3.2
70
84
9
297
35
13
0
50
1.48
15675--15710
17
2.1
17
100
0
72
30
11
0
58
1.33
17218--17253
18
2.0
18
100
0
72
22
22
11
44
1.84
19978--20006
9
3.3
9
95
4
51
79
0
20
0
0.74
20249--20296
22
2.2
22
88
3
71
56
4
10
29
1.52
23010--23047
18
2.1
18
100
0
76
26
5
23
44
1.74
27284--27317
12
2.7
13
90
4
52
20
11
8
58
1.59
27311--27369
28
2.3
24
82
11
64
18
6
15
59
1.58

Tables:   1

The End!