Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008667.1 Corchorus capsularis cultivar CVL-1 contig08688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49203

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6482--6507
2
13.0
2
100
0
52
50
0
0
50
1.00
7748--7818
32
2.2
32
85
7
92
56
28
7
8
1.55
8052--8148
32
3.1
32
84
1
124
38
32
10
18
1.85
11569--11672
54
1.9
54
96
0
190
50
17
16
15
1.78
15865--15889
13
1.9
13
100
0
50
4
24
0
72
1.02
16366--16446
16
5.1
16
84
0
81
34
37
18
9
1.84
16569--16615
21
2.2
21
92
0
76
29
8
6
55
1.55
18157--18203
21
2.2
21
88
0
67
38
23
2
36
1.67
18532--18570
4
9.8
4
94
0
69
71
0
2
25
0.98
25453--25493
20
2.0
20
85
4
55
17
29
19
34
1.94
29334--29418
9
9.1
10
86
11
51
67
0
32
0
0.91
29337--29423
6
14.0
6
80
7
57
68
0
31
0
0.89
29330--29423
18
5.3
18
84
3
102
67
0
32
0
0.91
29330--29423
15
5.9
15
81
9
89
67
0
32
0
0.91
30340--30851
35
14.7
35
92
0
837
40
10
16
32
1.83
33727--33774
13
3.6
13
73
15
53
12
25
0
62
1.30
33730--33802
27
2.6
28
83
10
80
15
23
0
61
1.33
33848--33929
21
3.9
21
80
7
103
21
17
7
53
1.67
33835--33945
42
2.6
41
76
12
116
21
21
7
49
1.73
34010--34050
16
2.6
16
88
7
57
14
24
4
56
1.58
34041--34147
40
2.6
39
85
7
133
24
20
3
51
1.64
38774--39196
72
5.9
72
85
2
519
31
18
27
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39562--39645
35
2.4
35
81
0
96
27
14
29
28
1.95
47317--47343
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!