Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008669.1 Corchorus capsularis cultivar CVL-1 contig08690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12332
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:10272 original size:6 final size:6

Alignment explanation


    Indices: 10261--10287  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

      10251 AAAGCAAAGC

                                           
      10261 AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAA

      10288 ACAGAATTAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Found at i:11253 original size:10 final size:10

Alignment explanation


    Indices: 11238--11262  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

      11228 GAGGACTCTA

                      
      11238 GAATTTTCTG
          1 GAATTTTCTG

                      
      11248 GAATTTTCTG
          1 GAATTTTCTG

                 
      11258 GAATT
          1 GAATT

      11263 GTGCAGCAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.