Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008676.1 Corchorus capsularis cultivar CVL-1 contig08697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75742

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
942--1634
345
2.0
346
95
0
1246
25
15
18
40
1.90
1288--2720
441
3.3
439
84
4
1796
26
13
17
42
1.86
26396--26609
39
5.6
39
82
5
229
32
27
26
14
1.95
26729--26823
36
2.6
36
73
6
102
32
18
29
18
1.96
29899--30110
108
2.0
107
90
2
336
45
8
11
33
1.72
31444--31514
37
1.9
37
94
0
124
38
8
16
36
1.80
33897--33967
37
1.9
37
94
0
124
38
8
16
36
1.80
38525--38575
3
17.3
3
91
4
86
62
1
0
35
1.06
59950--60018
31
2.2
31
92
0
111
27
18
7
46
1.75
60718--60759
22
1.9
22
95
0
75
16
19
23
40
1.91
61143--61180
20
1.9
20
100
0
76
5
21
0
73
1.02
64429--64594
53
3.2
53
63
30
138
38
9
2
50
1.47
64397--64605
104
2.0
104
96
0
382
38
8
2
50
1.47
64598--64666
25
2.8
25
74
10
70
27
5
2
63
1.31
70542--70576
17
2.1
17
100
0
70
40
20
11
28
1.87
70559--70982
201
2.1
201
98
0
814
34
22
17
25
1.96

Tables:   1

The End!