Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008682.1 Corchorus capsularis cultivar CVL-1 contig08703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54649

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2159--2192
16
2.1
16
100
0
68
47
17
23
11
1.81
5157--5191
16
2.2
16
89
0
52
45
17
25
11
1.81
6497--6562
18
3.3
18
67
28
53
33
9
22
34
1.86
6680--6885
21
9.9
21
81
6
231
36
25
12
26
1.91
6680--6885
41
5.0
42
83
4
231
36
25
12
26
1.91
6680--6885
62
3.3
61
85
7
254
36
25
12
26
1.91
7562--7621
29
2.1
29
90
0
93
45
20
3
31
1.67
24074--24519
226
2.0
226
86
1
635
34
14
17
33
1.91
33106--33146
9
4.4
9
87
6
55
34
0
0
65
0.93
34227--34259
12
2.8
12
86
4
50
48
9
12
30
1.71
34226--34276
23
2.2
23
79
6
59
52
9
11
25
1.68
35619--35676
21
2.9
20
84
5
73
27
22
12
37
1.89
40332--40362
2
15.5
2
100
0
62
48
0
0
51
1.00
41315--41374
22
2.6
24
78
5
70
20
3
11
65
1.39
46263--46431
66
2.6
65
83
4
223
34
7
20
36
1.82
46131--46450
22
14.6
22
71
8
186
35
8
19
36
1.82
48639--48667
2
14.5
2
100
0
58
51
0
0
48
1.00
51712--51783
25
2.9
25
91
0
117
34
18
31
15
1.92
51783--51820
19
2.0
20
89
5
60
15
0
34
50
1.45

Tables:   1

The End!