Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008685.1 Corchorus capsularis cultivar CVL-1 contig08706, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37032

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1725--1769
16
2.6
17
82
6
56
48
17
8
24
1.75
2858--2894
17
2.1
19
90
10
60
5
16
0
78
0.93
3653--3732
36
2.2
36
91
6
126
7
20
12
60
1.56
6404--7734
50
26.8
50
81
2
1263
38
17
26
17
1.91
6404--7555
150
7.7
150
84
1
1396
40
17
26
15
1.89
7559--7745
48
3.9
47
86
2
250
32
15
27
25
1.96
7748--7842
40
2.3
40
87
5
129
36
25
23
14
1.93
7750--7881
40
3.3
40
81
9
110
34
25
24
15
1.94
7764--7898
40
3.3
41
79
11
111
37
22
27
12
1.91
7746--8306
47
12.8
45
70
16
203
37
20
25
15
1.92
7915--8247
126
2.6
126
78
13
315
36
20
27
15
1.93
8907--9049
50
2.8
50
76
8
128
37
14
4
43
1.65
9009--9053
23
1.9
24
86
4
65
35
8
2
53
1.45
10974--10999
13
2.0
13
100
0
52
53
23
7
15
1.67
21472--21518
2
25.0
2
83
12
64
46
0
2
51
1.13
21590--21660
23
3.0
23
75
15
74
54
7
0
38
1.27
26921--27014
47
2.0
47
100
0
188
34
25
8
31
1.86
28388--28459
30
2.4
30
86
4
92
11
31
29
27
1.91
34337--34404
35
1.9
36
84
3
93
48
1
4
45
1.31

Tables:   1

The End!