Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008692.1 Corchorus capsularis cultivar CVL-1 contig08713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8333
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:4207 original size:13 final size:13

Alignment explanation


    Indices: 4189--4215  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       4179 GGTGACATCG

                         
       4189 GCATGGCATGGGT
          1 GCATGGCATGGGT

                         
       4202 GCATGGCATGGGT
          1 GCATGGCATGGGT

             
       4215 G
          1 G

       4216 TTGTCAGCGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.15, C:0.15, G:0.48, T:0.22


Consensus pattern (13 bp):   
GCATGGCATGGGT
Done.