genome.fa.s8695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008695.1 Corchorus capsularis cultivar CVL-1 contig08716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63809

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1246--1280	16	2.2	16	89	0	52	11	22	5	60	1.52
1902--1927	13	2.0	13	100	0	52	46	0	15	38	1.46
2057--2086	13	2.3	13	100	0	60	46	13	0	40	1.43
2722--2771	25	2.0	25	92	0	82	40	0	2	58	1.10
4514--4543	6	5.2	6	92	8	53	16	33	33	16	1.92
5604--5647	18	2.5	17	85	7	61	45	29	6	18	1.75
5612--5650	18	2.2	18	95	0	69	48	25	5	20	1.70
9074--9119	15	3.1	15	83	0	56	36	10	28	23	1.89
10072--10121	2	22.5	2	81	18	55	46	10	0	44	1.37
10073--10124	5	11.4	5	97	2	69	44	11	0	44	1.40
16806--17007	91	2.2	91	91	1	316	22	9	22	45	1.82
19050--19076	2	13.5	2	100	0	54	48	0	0	51	1.00
22286--22397	36	3.2	36	80	14	162	26	17	8	47	1.76
22300--22407	32	3.2	32	80	14	146	28	16	7	47	1.74
22435--22755	36	9.0	36	90	2	486	23	23	11	42	1.86
22435--22755	143	2.2	143	90	1	509	23	23	11	42	1.86
22435--22755	107	3.0	108	90	1	495	23	23	11	42	1.86
22755--22799	22	2.0	22	82	0	54	33	15	6	44	1.73
22761--22818	11	5.3	11	82	0	62	24	18	8	48	1.76
41502--42287	405	1.9	404	85	4	1073	31	14	12	41	1.83
53847--53887	22	1.9	21	85	5	55	31	7	0	60	1.24
55423--55481	30	2.0	30	86	0	82	32	33	13	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55620--55651	15	2.1	15	94	0	55	28	0	18	53	1.45
55782--55818	3	12.3	3	100	0	74	32	0	0	67	0.91
58425--58868	30	14.6	30	89	2	521	31	16	17	34	1.92
58425--58868	91	4.9	91	86	4	520	31	16	17	34	1.92
58925--59160	118	2.0	118	94	0	418	24	16	20	38	1.92
60180--60209	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!