Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008700.1 Corchorus capsularis cultivar CVL-1 contig08721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24140
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31


Found at i:23813 original size:22 final size:24

Alignment explanation


    Indices: 23755--23817  Score: 76
    Period size: 22  Copynumber: 2.7  Consensus size: 24

      23745 AAACCAACAC

                                    
      23755 TATGAAATTTTGATAACCACCTAT
          1 TATGAAATTTTGATAACCACCTAT

            *    *  *       *       
      23779 CATGAGATGTTGATAAGCA-C-AT
          1 TATGAAATTTTGATAACCACCTAT

                             
      23801 TATGAAATTTTGATAAC
          1 TATGAAATTTTGATAAC

      23818 AAAAATATCA


Statistics
Matches: 31,  Mismatches: 8, Indels: 2
        0.76            0.20        0.05

Matches are distributed among these distances:
  22   15  0.48
  23    1  0.03
  24   15  0.48

ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Consensus pattern (24 bp):   
TATGAAATTTTGATAACCACCTAT
Done.