Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000871.1 Corchorus capsularis cultivar CVL-1 contig00871, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25


Found at i:1201 original size:27 final size:24

Alignment explanation


    Indices: 1168--1221  Score: 63
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1158 TATAATGCAA

                   *                   
       1168 AAATCAACACTAATAAAAACTTAAAAG
          1 AAATCAAAAC-AATAAAAA--TAAAAG

                       *            
       1195 AAATCAAAACACTAAAAATAAAAG
          1 AAATCAAAACAATAAAAATAAAAG

               
       1219 AAA
          1 AAA

       1222 GGATATAGAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  24    9  0.36
  26    7  0.28
  27    9  0.36

ACGTcount: A:0.69, C:0.13, G:0.04, T:0.15


Consensus pattern (24 bp):   
AAATCAAAACAATAAAAATAAAAG
Done.