Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008712.1 Corchorus capsularis cultivar CVL-1 contig08733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15446

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2268--2310
20
2.1
21
83
12
54
46
11
9
32
1.72
3300--3655
37
9.4
37
73
13
206
50
7
16
25
1.71
3300--3655
151
2.3
151
82
8
411
50
7
16
25
1.71
3784--3938
44
3.5
44
77
8
161
52
1
21
23
1.57
3823--3861
18
2.2
18
90
9
62
58
2
23
15
1.49
3886--3959
25
2.8
27
84
15
102
52
0
20
27
1.46
8804--8877
16
4.8
16
67
21
50
75
0
20
4
0.96
8883--9021
43
3.2
43
83
7
181
38
6
17
37
1.76
9569--9606
18
2.1
19
90
5
60
78
0
21
0
0.74
10230--10317
6
14.8
6
74
15
76
80
0
17
2
0.81
10217--10288
32
2.3
32
88
7
103
83
0
12
4
0.79
10217--10332
49
2.3
50
82
7
139
78
0
17
4
0.91
10230--10315
19
4.5
19
83
11
104
80
0
17
2
0.82
10219--10315
10
9.9
10
77
15
96
79
0
16
4
0.88
10220--10318
38
2.6
37
80
12
119
79
0
16
4
0.87
10220--10334
37
2.9
42
77
11
109
77
0
18
4
0.93
10603--10701
51
1.9
51
85
4
137
35
17
12
35
1.87
11315--11722
70
5.9
70
86
3
529
25
27
17
29
1.97
11328--11722
141
2.8
140
85
5
525
25
27
17
29
1.98
11315--11722
211
2.0
207
85
5
554
25
27
17
29
1.97
12535--12568
14
2.4
14
95
0
59
23
11
14
50
1.76
12707--12747
20
2.0
20
90
0
64
29
9
21
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14858--14900
20
2.1
21
83
12
54
46
11
9
32
1.72

Tables:   1

The End!