Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008713.1 Corchorus capsularis cultivar CVL-1 contig08734, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19626

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--790
37
9.4
37
73
13
206
50
7
16
25
1.71
435--790
151
2.3
151
82
8
411
50
7
16
25
1.71
961--1001
18
2.3
18
91
8
66
56
2
24
17
1.53
1026--1099
25
2.8
27
84
15
102
52
0
20
27
1.46
993--1088
25
4.0
24
75
21
87
54
1
19
25
1.51
2011--2045
15
2.3
15
90
0
52
14
0
2
82
0.77
4262--4300
2
19.5
2
100
0
78
51
0
0
48
1.00
5930--5970
18
2.4
17
84
8
55
48
7
29
14
1.71
9796--9834
20
2.0
20
89
0
60
28
10
20
41
1.85
10390--10415
2
13.0
2
100
0
52
50
0
0
50
1.00
10473--10500
12
2.3
12
100
0
56
7
0
7
85
0.73
10467--10512
11
4.2
11
83
8
58
8
0
13
78
0.97
11970--12109
38
3.6
38
81
3
172
51
6
15
27
1.67
11932--12100
78
2.2
77
83
8
209
50
7
15
26
1.70
11968--12139
78
2.2
75
79
10
193
51
6
15
26
1.68
12120--12170
27
1.9
26
84
4
66
45
7
19
27
1.78
12172--12326
33
4.8
33
91
4
210
58
2
21
16
1.50
12190--12279
17
5.4
17
69
15
71
57
3
24
14
1.52
12174--12362
33
5.8
31
85
7
146
59
3
21
15
1.51
12343--12401
15
4.0
15
74
26
63
52
6
23
16
1.68
12375--12456
32
2.5
33
82
11
105
56
3
23
17
1.57
12174--12438
16
16.4
16
68
18
131
57
3
21
16
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12374--12456
16
5.1
15
75
17
51
56
3
22
16
1.56
12749--12793
14
3.2
14
90
6
65
51
4
24
20
1.66

Tables:   1

The End!