Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008718.1 Corchorus capsularis cultivar CVL-1 contig08739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39970

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1688--2718
432
2.4
428
90
3
1599
41
14
14
30
1.85
3295--3357
22
2.8
22
85
4
74
57
4
3
34
1.36
3374--3481
33
3.3
33
93
1
182
6
34
30
28
1.82
3665--3708
21
2.1
21
86
0
61
34
9
38
18
1.82
7755--7808
20
2.7
20
85
5
65
1
25
0
72
0.95
7797--7862
31
2.1
31
82
0
78
6
21
7
65
1.40
11249--11296
15
3.2
15
93
0
78
27
2
14
56
1.50
13692--13792
37
2.6
39
86
10
145
28
16
9
44
1.80
13692--13798
41
2.7
39
84
5
137
28
16
10
44
1.80
16158--16192
17
2.0
18
94
5
63
2
11
0
85
0.69
21066--21256
52
3.7
52
88
2
260
30
15
19
34
1.93
21267--21367
35
3.0
32
77
14
105
25
16
18
38
1.92
28421--28639
102
2.1
103
87
3
309
36
13
20
29
1.91
29357--29386
6
5.0
6
91
0
51
30
0
0
70
0.88
29603--29863
144
1.8
143
95
2
479
56
13
11
18
1.67
33025--33077
3
17.7
3
96
0
97
30
0
0
69
0.88
34979--35031
2
29.0
2
78
17
62
49
1
0
49
1.12
37517--37606
21
4.1
22
84
5
85
53
10
23
13
1.69
37517--37586
21
3.3
21
87
2
95
54
8
24
12
1.66

Tables:   1

The End!