genome.fa.s8720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008720.1 Corchorus capsularis cultivar CVL-1 contig08741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89149

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2987--3022	19	1.9	18	88	5	54	33	22	2	41	1.68
3809--3870	17	3.5	20	77	20	66	12	29	3	54	1.53
10077--10106	15	1.9	16	93	6	53	86	0	0	13	0.57
10077--10108	16	1.9	17	93	6	57	84	0	0	15	0.63
11801--11834	17	2.0	17	94	0	59	55	14	5	23	1.61
11908--11938	15	2.0	16	93	6	55	83	0	0	16	0.64
13432--13536	33	3.2	33	79	5	97	24	8	20	45	1.79
18779--18812	9	3.7	9	96	4	59	14	0	0	85	0.60
18780--18812	10	3.4	10	91	4	50	12	0	0	87	0.53
19462--19493	15	2.1	15	100	0	64	46	6	21	25	1.74
27020--27119	33	3.1	32	81	4	110	10	27	41	22	1.85
27091--27129	21	2.0	20	85	10	53	15	30	33	20	1.94
27930--28007	31	2.5	31	97	0	147	29	21	24	24	1.99
29249--29289	21	2.0	21	90	0	64	31	29	31	7	1.85
29249--29301	21	2.5	21	84	0	61	28	30	32	9	1.88
29777--29818	21	2.0	21	95	0	75	19	30	33	16	1.94
29798--29904	33	3.3	31	75	12	81	21	41	27	10	1.85
29879--29941	33	1.9	33	93	0	108	20	42	25	11	1.85
30859--30892	8	4.1	8	85	7	50	58	14	2	23	1.50
30966--30999	5	6.6	5	93	6	59	79	0	0	20	0.73
45991--46036	24	1.9	24	82	8	58	15	13	4	67	1.38
46962--47008	22	2.1	22	92	0	76	40	6	6	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46962--47004	11	3.9	11	87	0	59	39	6	6	46	1.58
48394--48433	21	1.9	21	85	10	55	15	7	12	65	1.47
57968--58041	17	4.6	16	76	8	69	51	28	12	8	1.67
57993--58027	15	2.3	15	90	9	54	57	22	8	11	1.61
57963--58041	32	2.4	32	80	2	95	50	30	11	7	1.66
58228--58300	16	4.6	16	68	5	58	36	36	10	15	1.82
58228--58300	32	2.3	32	85	0	92	36	36	10	15	1.82
59837--59901	33	2.0	33	96	3	123	40	18	0	41	1.51
63300--63635	177	1.9	178	85	1	469	40	21	13	25	1.89
66008--66555	49	11.2	49	91	0	747	30	14	32	22	1.94
68991--69140	56	2.7	57	80	9	168	29	22	5	43	1.75
70536--70689	58	2.7	57	87	5	213	26	20	7	45	1.78
70672--70704	9	3.7	9	91	0	57	12	30	0	57	1.35
70663--70712	18	2.8	17	82	11	64	16	26	4	54	1.59
70684--70760	32	2.4	33	87	10	106	12	28	2	55	1.51
70730--71034	40	7.6	40	86	1	369	18	23	3	54	1.60
70730--71009	121	2.3	120	83	3	355	18	23	3	53	1.60
70880--70985	15	7.8	14	67	20	55	18	24	3	52	1.62
70953--71016	19	3.3	19	64	23	51	15	26	4	53	1.62
71006--71088	24	3.2	24	76	18	85	13	22	3	60	1.49
71020--71070	15	3.4	15	80	20	70	11	19	1	66	1.33
71013--71070	30	1.9	30	96	0	107	10	22	3	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71045--71096	24	2.2	24	86	6	70	13	25	3	57	1.53
70787--71539	255	3.0	246	75	11	720	15	23	4	57	1.56
70886--71538	175	3.9	171	83	10	842	14	23	4	57	1.56
71060--71575	40	12.6	40	75	13	374	14	22	4	58	1.55
71253--71340	44	2.0	44	88	0	131	15	19	3	61	1.48
70811--71343	215	2.5	218	76	12	584	15	23	4	57	1.56
71329--71379	15	3.4	15	75	20	61	11	17	1	68	1.29
71059--71495	174	2.7	155	83	11	531	14	23	4	57	1.55
71322--71379	30	1.9	30	96	0	107	10	18	3	67	1.35
71368--71409	20	2.1	20	95	0	75	11	19	4	64	1.44
71350--71418	20	3.1	22	75	23	72	10	20	4	65	1.40
70893--71538	329	1.9	335	87	8	965	14	23	4	57	1.55
71396--71597	80	2.5	81	82	6	230	16	23	3	56	1.57
71454--71565	21	5.5	22	65	24	66	16	20	5	58	1.57
71389--71625	121	2.0	119	80	8	273	16	22	4	56	1.56
71561--71868	32	9.8	32	89	2	455	16	23	5	55	1.61
70893--71702	329	2.4	324	81	11	862	15	22	4	57	1.56
79521--79565	23	1.9	24	86	13	67	11	17	17	53	1.72

Tables:   1

The End!