Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008724.1 Corchorus capsularis cultivar CVL-1 contig08745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 918

Length: 1531
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:831 original size:5 final size:5

Alignment explanation


    Indices: 816--848  Score: 57
    Period size: 5  Copynumber: 6.6  Consensus size: 5

        806 GTTATATAGA

                   *                               
        816 AAAAT ACAAT AAAAT AAAAT AAAAT AAAAT AAA
          1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA

        849 TTTCGACTAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   26  1.00

ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18


Consensus pattern (5 bp):   
AAAAT

Done.