Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008729.1 Corchorus capsularis cultivar CVL-1 contig08750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58441

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4276--4588
155
2.0
156
95
2
567
39
10
17
31
1.84
9071--9123
20
2.7
20
88
5
72
3
1
15
79
0.96
9071--9119
6
7.7
6
84
11
62
4
2
14
79
0.97
12523--12551
2
14.5
2
100
0
58
51
0
0
48
1.00
15128--15166
20
2.0
20
89
0
60
38
2
23
35
1.68
15313--15471
79
2.0
80
96
1
293
52
16
8
23
1.70
15669--15796
38
3.6
38
68
23
105
38
3
8
50
1.49
15669--15815
69
2.1
69
93
1
251
39
2
10
47
1.52
16467--16536
27
2.6
27
77
2
70
10
35
34
20
1.86
16553--16735
29
6.4
29
87
2
244
24
21
27
26
1.99
16877--17204
29
11.3
29
89
1
462
21
22
27
27
1.99
17829--17987
28
5.8
27
74
10
144
20
13
20
44
1.86
17970--18009
20
2.0
20
95
0
71
10
12
40
37
1.77
18064--18393
58
5.7
58
88
3
391
17
21
34
26
1.96
18938--18971
15
2.3
15
90
10
52
55
0
2
41
1.15
19719--19767
24
2.1
22
92
7
80
18
20
20
40
1.91
19978--20047
28
2.5
28
90
0
104
14
27
27
31
1.95
20024--20064
19
2.2
19
100
0
82
14
26
29
29
1.95
20084--20161
27
2.9
27
67
7
68
10
34
35
19
1.85
23044--23071
2
14.0
2
100
0
56
50
0
0
50
1.00
27529--27557
3
10.0
3
92
7
51
68
0
0
31
0.89
39676--39744
33
2.1
33
83
5
86
13
42
36
8
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40018--40048
10
3.1
10
100
0
62
38
0
29
32
1.57
47599--47657
30
2.0
30
100
0
118
37
25
6
30
1.82
47601--47665
30
2.2
30
94
0
112
36
26
6
30
1.81
48210--48318
54
2.0
54
96
0
200
36
12
19
31
1.89
48226--48359
54
2.4
54
85
7
162
35
17
16
31
1.92
48338--48398
29
2.1
29
96
0
113
32
16
21
29
1.95
48403--48466
33
1.9
33
96
0
119
26
20
21
31
1.98
48501--48574
32
2.2
33
85
4
96
47
4
28
20
1.68
48776--48827
17
3.1
17
88
5
70
55
3
28
11
1.53
48766--48827
17
3.5
19
75
20
62
54
3
29
12
1.53
49376--49819
166
2.7
166
87
1
638
40
16
13
28
1.87
53560--53591
13
2.4
14
85
15
50
28
6
12
53
1.62

Tables:   1

The End!