Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008734.1 Corchorus capsularis cultivar CVL-1 contig08755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6534
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3758 original size:21 final size:21

Alignment explanation


    Indices: 3711--3764  Score: 56
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       3701 AGCACTGGAG

                        * *      
       3711 CACATGGGGTGCGAGGCAAAC
          1 CACATGGGGTGCCAAGCAAAC

             *                ** 
       3732 CTCATGGGGTGCCAAGCATGC
          1 CACATGGGGTGCCAAGCAAAC

                         
       3753 CACAT-GGGTGCC
          1 CACATGGGGTGCC

       3765 CAGCGCAAGT


Statistics
Matches: 27,  Mismatches: 6, Indels: 1
        0.79            0.18        0.03

Matches are distributed among these distances:
  20    7  0.26
  21   20  0.74

ACGTcount: A:0.22, C:0.28, G:0.35, T:0.15


Consensus pattern (21 bp):   
CACATGGGGTGCCAAGCAAAC

Found at i:5380 original size:12 final size:11

Alignment explanation


    Indices: 5354--5385  Score: 55
    Period size: 12  Copynumber: 2.8  Consensus size: 11

       5344 ATTTGAAAGC

                       
       5354 TTTTATTTTTA
          1 TTTTATTTTTA

                        
       5365 TTTTATTTTCTA
          1 TTTTATTTT-TA

                     
       5377 TTTTATTTT
          1 TTTTATTTT

       5386 AATCAATTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    9  0.45
  12   11  0.55

ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81


Consensus pattern (11 bp):   
TTTTATTTTTA
Done.